Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015791271.1_cds_XP_016506391.1_1891
CDS Infomation

[gene=LOC107824158] [db_xref=GeneID:107824158] [protein=pheophytinase, chloroplastic-like] [protein_id=XP_016506391.1] [location=join(16144..16845,17541..17767,18030..18221,18305..18461,19476..19715)] [gbkey=CDS]
Sequence

ATGGAAGTTCATTCTTGCTATTCTACAACCTATTATTGCATTGTAAATGTTAGCAAATGT
CTAATTTCAAATCAGGCAAAGTTTCCCATAGTAAAAGAAAGAAGGTTGTATTCTGGTTTA
GATGTTTATAGCATAAAGAAAAAGAGGACTCAGAGGCTTACTATCACCGCTCTGAAAGGA
TTTGACAGTGTCGACTCAAGTCTCTTGAGTGAAAGCTATAACTCAGATATTATAGATGGG
AAAGTTGGTACCCAAGATGTGATTGGTAGTGCTAAATCAGTACCAAAGGTTATCGTTCCC
AGTTTACCTGATGAAACTAAAGCCGACTCGGTTGCTGTGGTCGATAGCTGCTTGTGGGAA
TGGAAACCCAAACTGAAAGTTCATTATGAGAAATCTGGTTGTCAAAATGTTAACTCAGCA
CCAATACTTTTTCTTCCTGGTTTTGGTGTTGGTTCCTTTCACTATGAAAAGCAATTAAAG
GATCTTGGTTGTGATCACAGAATATGGGCATTAGATTTTCTTGGACAAGGGAAGTCATTG
CCATGTGAGGATCCAACTTTGCAGTCCAAAAGATTAGATGAATCTGAGCGTGATGGAAAC
AATGCCGTCTGGGGTTTTGGAGATGAAGCAGAACCTTGGGCGAAAGAACTTGTCTATTCT
GTTGACTTATGGAGGGACCAAGTACGCTATTTCATTGAAGAGGTTATTAAAGAACCAGTC
TACATTGTGGGAAATTCACTTGGTGGATATGTTGCCCTCTACTTAGCAGCATACTACCCT
CAATTGGTGAAAGGTGTAACCTTGCTGAATGCGACGCCATTTTGGGGATTTCTTCCTAAT
CCTGTTAGATCTCCGAGATTATCTAGATTGTTTCCATGGGCTGGGACTTTTCCTCTTCCC
GACACTATCAGAAAGCTCACAGAACTTGTATGGCAGAAAATTAGTGCTCCCGAGAGCATT
GCAGAGGTGCTTAAACAAGTTTACGCTGATCATACCACAAAAGTGGATAAAGTTTTCTCC
AGTATTCTTGAGGTAACAGAACACCCTGCAGCAGCTGCATCCCTTGCCTCAATATTATTC
GCTCCTCGGGGACAACTAAGTTTTAAAGAGGCACTTACTGGGTGTCGAATGAACAATGTG
CCCGTTTGTCTCATGTATGGAAAAGAAGACCCCTGGGTGATGCCTTTTTGGGCGCTACAA
GTGAAACGACAATTGCCTGAAGCTCCATATTATCAGATTAGCCCTGCTGGTCACTGCCCC
CATGATGAAGTCCCAGAGATTGTGAACTTTTTGCTGCGTGGATGGATCAAGAACATCGAA
TCGCATAGTTCAGTCGCATTGCCTCTGCTTGATAGTCCAGAAAGCATCGAATATGACATT
GTCAGAGACTTGGAATTTGTTCGGCAAGGAATGAAAAAATCAGTAAGAGTGCAGTTTTAC
GGGTCAATGACTTCTCAATGGGAGAAGCTTGGGATGTTTCTAAAATCTCGATTCCAATAT
GGAGTTTACTCTCCATAA

Peptide Sequence

PEP ID

XP_016506391.1
PEP Infomation

PREDICTED: pheophytinase, chloroplastic-like [Nicotiana tabacum]
Sequence

MEVHSCYSTTYYCIVNVSKCLISNQAKFPIVKERRLYSGLDVYSIKKKRTQRLTITALKG
FDSVDSSLLSESYNSDIIDGKVGTQDVIGSAKSVPKVIVPSLPDETKADSVAVVDSCLWE
WKPKLKVHYEKSGCQNVNSAPILFLPGFGVGSFHYEKQLKDLGCDHRIWALDFLGQGKSL
PCEDPTLQSKRLDESERDGNNAVWGFGDEAEPWAKELVYSVDLWRDQVRYFIEEVIKEPV
YIVGNSLGGYVALYLAAYYPQLVKGVTLLNATPFWGFLPNPVRSPRLSRLFPWAGTFPLP
DTIRKLTELVWQKISAPESIAEVLKQVYADHTTKVDKVFSSILEVTEHPAAAASLASILF
APRGQLSFKEALTGCRMNNVPVCLMYGKEDPWVMPFWALQVKRQLPEAPYYQISPAGHCP
HDEVPEIVNFLLRGWIKNIESHSSVALPLLDSPESIEYDIVRDLEFVRQGMKKSVRVQFY
GSMTSQWEKLGMFLKSRFQYGVYSP

Transcript Sequence

Gene sequence data has not been registered.